C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | U6 snRNA biogenesis 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000564387  |
USB1-015 |
ENSG00000103005 |
9606 | + |
16:58001421-58017380  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008Z0 | CIL_0008Z0_0001 | VISTA | 16:57818949-58421282 |
| CIL_00052C | CIL_00052C_0002 | CGP | 16:57994668-58021618 |
| CIL_0004RY | CIL_0004RY_0001 | CGP | 16:57999546-58046901 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0004518 | IEA | nuclease activity |
| GO:0034477 | IEA | U6 snRNA 3'-end processing |
| GO:0090305 | IEA | nucleic acid phosphodiester bond hydrolysis |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000145060
|
Usb1-003 | retained_intron | Mus_musculus | 0 | 300 |
|
ENSMUST00000034245
|
Usb1-001 | protein_coding | Mus_musculus | 0 | 300 |
