C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U6 snRNA biogenesis 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145060 Usb1-003 ENSMUSG00000031792 10090 + 8:95332325-95344281 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENSMUST00000145060
Transcript ID Colon
ENSMUST00000145060 3.855±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0002 VISTA 8:95126508-95728314
CIL_00052C CIL_00052C_0003 CGP 8:95326137-95347507
CIL_0004RY CIL_0004RY_0002 CGP 8:95332292-95374293

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219281 USB1-001 protein_coding Homo_sapiens 0 560
ENST00000423271 USB1-004 protein_coding Homo_sapiens 0 335
ENST00000539737 USB1-002 protein_coding Homo_sapiens 0 337
ENST00000561568 USB1-014 protein_coding Homo_sapiens 0 512
ENST00000561743 USB1-012 protein_coding Homo_sapiens 0 497
ENST00000562534 USB1-018 processed_transcript Homo_sapiens 0 412
ENST00000563149 USB1-003 protein_coding Homo_sapiens 0 339
ENST00000563207 USB1-013 processed_transcript Homo_sapiens 0 209
ENST00000564387 USB1-015 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000565151 USB1-011 retained_intron Homo_sapiens 0 230
ENST00000565662 USB1-017 processed_transcript Homo_sapiens 0 364
ENST00000566082 USB1-005 retained_intron Homo_sapiens 9e-34 150
ENST00000566292 USB1-010 retained_intron Homo_sapiens 0 339
ENST00000568848 USB1-009 processed_transcript Homo_sapiens 0 335
ENST00000569252 USB1-016 processed_transcript Homo_sapiens 0 316

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