C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U6 snRNA biogenesis 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034245 Usb1-001 ENSMUSG00000031792 10090 + 8:95332292-95347507 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034245
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034245 12.316±2.66 10.924±0.89 16.430±3.36 14.608±2.94 11.112±3.59 15.951±3.70 8.282±0.42 10.927±0.88 8.010±1.28 14.396±0.57 2.359±0.32 17.206±4.27 18.342±9.48 12.495±5.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0002 VISTA 8:95126508-95728314
CIL_00052C CIL_00052C_0003 CGP 8:95326137-95347507
CIL_0004RY CIL_0004RY_0002 CGP 8:95332292-95374293

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000175 ISS 3'-5'-exoribonuclease activity
GO:0005634 ISS nucleus
GO:0006397 IEA mRNA processing
GO:0008380 ISS RNA splicing
GO:0034477 IEA:ISS U6 snRNA 3'-end processing
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219281 USB1-001 protein_coding Homo_sapiens 0 774
ENST00000423271 USB1-004 protein_coding Homo_sapiens 0 353
ENST00000539737 USB1-002 protein_coding Homo_sapiens 0 355
ENST00000561568 USB1-014 protein_coding Homo_sapiens 0 532
ENST00000561743 USB1-012 protein_coding Homo_sapiens 0 693
ENST00000562534 USB1-018 processed_transcript Homo_sapiens 0 412
ENST00000563149 USB1-003 protein_coding Homo_sapiens 0 344
ENST00000563207 USB1-013 processed_transcript Homo_sapiens 0 209
ENST00000564387 USB1-015 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000565151 USB1-011 retained_intron Homo_sapiens 0 324
ENST00000565662 USB1-017 processed_transcript Homo_sapiens 0 385
ENST00000566082 USB1-005 retained_intron Homo_sapiens 0 346
ENST00000566292 USB1-010 retained_intron Homo_sapiens 0 346
ENST00000568848 USB1-009 processed_transcript Homo_sapiens 0 340
ENST00000569252 USB1-016 processed_transcript Homo_sapiens 0 324

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