C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spinster homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000565975 SPNS1-003 ENSG00000169682 9606 + 16:28974772-28984548 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLiverMusclePlacentaTestisENST00000565975
Transcript ID Adrenal Brain Breast Heart Kidney Liver Muscle Placenta Testis
ENST00000565975 15.943±0.00 1.734±0.87 10.219±0.00 1.329±1.13 4.950±2.57 2.761±0.00 3.873±0.00 8.846±1.18 6.095±1.66

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005743 IEA mitochondrial inner membrane
GO:0005765 IDA lysosomal membrane
GO:0006869 IEA lipid transport
GO:0016021 IEA integral component of membrane
GO:0022857 IEA transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032994 Spns1-001 protein_coding Mus_musculus 0 1953
ENSMUST00000119754 Spns1-005 protein_coding Mus_musculus 0 1607
ENSMUST00000138141 Spns1-004 nonsense_mediated_decay Mus_musculus 0 1267
ENSMUST00000126810 Spns1-002 retained_intron Mus_musculus 0 1197
ENSMUST00000119846 Spns1-003 protein_coding Mus_musculus 0 1018
ENSMUST00000150476 Spns1-006 protein_coding Mus_musculus 0 941
ENSMUST00000137263 Spns1-008 retained_intron Mus_musculus 0 551
ENSMUST00000152000 Spns1-009 retained_intron Mus_musculus 0 398
ENSMUST00000150748 Spns1-007 retained_intron Mus_musculus 0 305

Loading