C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000566620 CDH13-201 ENSG00000140945 9606 + 16:82858356-83796608 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000566620
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000566620 6.558±0.00 4.791±0.00 7.665±2.50 2.960±1.79 2.270±2.11 13.380±6.49 1.678±0.00 0.382±0.00 2.398±1.24 4.219±0.05 1.655±0.53 2.810±0.95 2.094±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NV CIL_0003NV_0001 CGP 16:82147798-83800640
CIL_0008L6 CIL_0008L6_0001 VISTA 16:82434004-83036442
CIL_0005JS CIL_0005JS_0001 CGP 16:82626803-83819737

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117160 Cdh13-001 protein_coding Mus_musculus 0 2494
ENSMUST00000148836 Cdh13-006 retained_intron Mus_musculus 0 1297
ENSMUST00000142551 Cdh13-005 retained_intron Mus_musculus 0 852
ENSMUST00000145849 Cdh13-003 retained_intron Mus_musculus 0 671
ENSMUST00000151842 Cdh13-007 processed_transcript Mus_musculus 0 564
ENSMUST00000129548 Cdh13-004 retained_intron Mus_musculus 0 483
ENSMUST00000123567 Cdh13-002 processed_transcript Mus_musculus 0 479

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