C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000567109 CDH13-001 ENSG00000140945 9606 + 16:82626803-83800640 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverLungENST00000567109
Transcript ID Kidney Liver Lung
ENST00000567109 0.038±0.00 0.192±0.00 0.330±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NV CIL_0003NV_0001 CGP 16:82147798-83800640
CIL_0008L6 CIL_0008L6_0001 VISTA 16:82434004-83036442
CIL_0005JS CIL_0005JS_0001 CGP 16:82626803-83819737

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001938 IMP positive regulation of endothelial cell proliferation
GO:0001954 IMP positive regulation of cell-matrix adhesion
GO:0002040 IDA sprouting angiogenesis
GO:0005509 IEA calcium ion binding
GO:0005615 IDA extracellular space
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005901 IDA caveola
GO:0005925 IDA focal adhesion
GO:0007156 IDA:IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007162 IDA negative regulation of cell adhesion
GO:0007266 IMP Rho protein signal transduction
GO:0008285 IDA negative regulation of cell proliferation
GO:0016020 IEA membrane
GO:0016339 IDA calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016601 IMP Rac protein signal transduction
GO:0030032 IDA lamellipodium assembly
GO:0030100 IMP regulation of endocytosis
GO:0030169 IDA low-density lipoprotein particle binding
GO:0030335 IDA positive regulation of cell migration
GO:0031225 IEA anchored component of membrane
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0042058 IMP regulation of epidermal growth factor receptor signaling pathway
GO:0043005 IDA neuron projection
GO:0043542 IDA endothelial cell migration
GO:0043616 IDA keratinocyte proliferation
GO:0045216 TAS cell-cell junction organization
GO:0045296 IDA cadherin binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048661 IMP positive regulation of smooth muscle cell proliferation
GO:0050850 IDA positive regulation of calcium-mediated signaling
GO:0050927 IDA positive regulation of positive chemotaxis
GO:0051668 IMP localization within membrane
GO:0055096 IDA low-density lipoprotein particle mediated signaling
GO:0055100 ISS adiponectin binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071813 IDA lipoprotein particle binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117160 Cdh13-001 protein_coding Mus_musculus 0 2708
ENSMUST00000148836 Cdh13-006 retained_intron Mus_musculus 0 1399
ENSMUST00000142551 Cdh13-005 retained_intron Mus_musculus 0 994
ENSMUST00000145849 Cdh13-003 retained_intron Mus_musculus 0 845
ENSMUST00000129548 Cdh13-004 retained_intron Mus_musculus 0 586
ENSMUST00000151842 Cdh13-007 processed_transcript Mus_musculus 0 564
ENSMUST00000123567 Cdh13-002 processed_transcript Mus_musculus 0 479
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000002 68

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