C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000567149 RP11-391L3.5-001 ENSG00000260229 9606 - 16:81476023-81476519 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverOvaryPlacentaENST00000567149
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Ovary Placenta
ENST00000567149 0.035±0.00 0.300±0.00 0.626±0.00 0.078±0.00 0.347±0.00 0.155±0.00 0.034±0.00 0.075±0.01 0.164±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ZR CIL_0001ZR_0001 CGP 16:81314952-81711762
CIL_0003A9 CIL_0003A9_0001 CGP 16:81445170-81962693

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 579
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 573
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 568
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 551
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 544
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 538
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 514
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 505
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 503
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 466
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000121819 Gm6044-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000119162 Gm15621-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000121223 Gm12632-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000118166 Gm13454-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 6e-32 141

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