C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000567701 RP11-297L17.6-001 ENSG00000234337 9606 + 16:52655307-52656045 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyMuscleOvaryPlacentaTestisENST00000567701
Transcript ID Adipose Adrenal Brain Breast Kidney Muscle Ovary Placenta Testis
ENST00000567701 0.038±0.00 0.086±0.00 0.064±0.00 0.109±0.09 0.022±0.00 0.059±0.02 0.028±0.00 0.059±0.00 0.057±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_0008J3 CIL_0008J3_0001 VISTA 16:52102343-52703464
CIL_00085C CIL_00085C_0001 VISTA 16:52112138-52713325
CIL_0008LS CIL_0008LS_0001 VISTA 16:52134617-52737850
CIL_0008J0 CIL_0008J0_0001 VISTA 16:52169922-52771014
CIL_0008J1 CIL_0008J1_0001 VISTA 16:52196629-52798059
CIL_000859 CIL_000859_0001 VISTA 16:52217685-52818923
CIL_0007WW CIL_0007WW_0001 VISTA 16:52223494-52824873
CIL_0008U8 CIL_0008U8_0001 VISTA 16:52406202-53010959
CIL_00077Q CIL_00077Q_0001 CGP 16:52438005-53329150
CIL_0009C3 CIL_0009C3_0001 VISTA 16:52653279-53264699

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072359 Tpm3-rs7-201 protein_coding Mus_musculus 0 1033
ENSMUST00000029549 Tpm3-003 protein_coding Mus_musculus 0 1016
ENSMUST00000062193 Tpm3-201 protein_coding Mus_musculus 0 867
ENSMUST00000119570 Tpm3-001 protein_coding Mus_musculus 0 867
ENSMUST00000119158 Tpm3-005 protein_coding Mus_musculus 0 747
ENSMUST00000118566 Tpm3-004 protein_coding Mus_musculus 0 747
ENSMUST00000121503 Tpm3-002 protein_coding Mus_musculus 0 597
ENSMUST00000131354 Tpm3-006 retained_intron Mus_musculus 0 586
ENSMUST00000147430 Tpm3-011 retained_intron Mus_musculus 0 586
ENSMUST00000149432 Tpm3-007 protein_coding Mus_musculus 0 438
ENSMUST00000133281 Tpm3-010 retained_intron Mus_musculus 0 401
ENSMUST00000133361 Tpm3-013 retained_intron Mus_musculus 0 396
ENSMUST00000149115 Tpm3-009 retained_intron Mus_musculus 0 296
ENSMUST00000151798 Tpm3-012 retained_intron Mus_musculus 0 270
ENSMUST00000149734 Tpm3-014 retained_intron Mus_musculus 0 263

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