C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000568600 RP11-598D12.4-001 ENSG00000198555 9606 + 16:33976039-33987630 unprocessed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryTestisENST00000568600
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Testis
ENST00000568600 0.079±0.00 0.042±0.00 0.154±0.00 0.047±0.00 0.052±0.00 0.146±0.00 0.033±0.00 0.010±0.00 0.062±0.00 0.012±0.00 0.273±0.14

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114467 Slc6a8-201 protein_coding Mus_musculus 0 804
ENSMUST00000114464 Slc6a8-004 nonsense_mediated_decay Mus_musculus 0 804
ENSMUST00000114465 Slc6a8-002 protein_coding Mus_musculus 0 804
ENSMUST00000164449 Slc6a8-006 protein_coding Mus_musculus 0 804
ENSMUST00000170614 Slc6a8-009 retained_intron Mus_musculus 0 787
ENSMUST00000168831 Slc6a8-003 protein_coding Mus_musculus 0 747
ENSMUST00000033752 Slc6a8-001 protein_coding Mus_musculus 0 741
ENSMUST00000171398 Slc6a8-012 protein_coding Mus_musculus 0 601
ENSMUST00000146796 Slc6a8-011 retained_intron Mus_musculus 0 575
ENSMUST00000168764 Slc6a8-013 retained_intron Mus_musculus 0 449
ENSMUST00000170574 Slc6a8-015 retained_intron Mus_musculus 0 298
ENSMUST00000167828 Slc6a8-014 retained_intron Mus_musculus 0 285
ENSMUST00000166200 Slc6a8-010 processed_transcript Mus_musculus 0 283
ENSDART00000092131 si:ch211-117c9.5-001 protein_coding Danio_rerio 9e-27 126
ENSDART00000149136 si:ch211-117c9.5-002 protein_coding Danio_rerio 2e-23 115

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