C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000569073 CTD-2562G15.2-001 ENSG00000261714 9606 + 15:75415249-75416020 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainLiverMusclePlacentaTestisENST00000569073
Transcript ID Adrenal Bladder Brain Liver Muscle Placenta Testis
ENST00000569073 0.319±0.00 0.524±0.00 0.043±0.00 0.070±0.03 0.108±0.00 0.049±0.00 0.050±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000F8 CIL_0000F8_0002 CGP 15:75369379-75579289

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178676 Gm10182-201 processed_pseudogene Mus_musculus 0 291
ENSMUST00000102552 Hmgn2-003 protein_coding Mus_musculus 0 291
ENSMUST00000102553 Hmgn2-001 protein_coding Mus_musculus 0 291
ENSMUST00000075602 Gm10282-201 protein_coding Mus_musculus 0 291
ENSMUST00000093430 Gm7125-201 processed_pseudogene Mus_musculus 0 276
ENSMUST00000189273 RP23-429J21.2-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000123234 Hmgn2-012 protein_coding Mus_musculus 0 274
ENSMUST00000125266 Hmgn2-011 processed_transcript Mus_musculus 0 274
ENSMUST00000137456 Hmgn2-010 processed_transcript Mus_musculus 0 274
ENSMUST00000138458 Hmgn2-004 processed_transcript Mus_musculus 0 274
ENSMUST00000105893 Hmgn2-009 protein_coding Mus_musculus 0 274
ENSMUST00000189471 RP24-176P22.2-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000159886 Gm10357-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000121537 Gm7931-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000120483 Gm14008-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000100472 Hmgn2-007 protein_coding Mus_musculus 0 263
ENSMUST00000120716 Hmgn2-ps1-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000115986 Hmgn2l6-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000188317 RP24-447G12.2-001 protein_coding Mus_musculus 0 237
ENSMUST00000153622 Hmgn2-013 retained_intron Mus_musculus 0 231
ENSMUST00000136327 Hmgn2-006 protein_coding Mus_musculus 0 231
ENSMUST00000165525 Gm16494-201 protein_coding Mus_musculus 0 224
ENSMUST00000097278 Gm6594-201 protein_coding Mus_musculus 0 224
ENSMUST00000120954 Gm12196-001 processed_pseudogene Mus_musculus 0 207
ENSMUST00000177675 Gm20379-201 processed_pseudogene Mus_musculus 0 204
ENSMUST00000130809 Hmgn2-005 retained_intron Mus_musculus 0 195
ENSMUST00000145025 Hmgn2-002 retained_intron Mus_musculus 0 195
ENSMUST00000118775 Gm15195-001 processed_pseudogene Mus_musculus 0 189
ENSMUST00000074801 Gm10298-201 processed_pseudogene Mus_musculus 9.94922e-44 180
ENSMUST00000153501 Gm16510-001 processed_pseudogene Mus_musculus 3e-40 169
ENSMUST00000136859 Hmgn2-008 retained_intron Mus_musculus 3e-30 135

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