C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000569896 RAB11A-003 ENSG00000103769 9606 + 15:65869541-65888635 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000569896
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000569896 9.708±0.00 7.295±0.00 10.347±1.15 8.748±0.00 8.940±5.08 6.014±0.00 15.418±1.25 5.022±0.00 22.716±13.80 16.374±7.37 23.315±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VF CIL_0004VF_0002 CGP 15:65611366-65792293

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000910 IMP cytokinesis
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005771 IDA multivesicular body
GO:0005802 IDA trans-Golgi network
GO:0005886 IEA plasma membrane
GO:0006184 IDA:IEA GTP catabolic process
GO:0006833 TAS water transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0010796 IMP regulation of multivesicular body size
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IDA vesicle-mediated transport
GO:0019905 NAS syntaxin binding
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0031175 IMP neuron projection development
GO:0031489 IPI myosin V binding
GO:0032154 IDA cleavage furrow
GO:0032402 ISS melanosome transport
GO:0036258 IMP multivesicular body assembly
GO:0043234 IDA protein complex
GO:0045335 IDA phagocytic vesicle
GO:0048227 NAS plasma membrane to endosome transport
GO:0055037 ISS recycling endosome
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0072659 IDA protein localization to plasma membrane
GO:0090150 IMP establishment of protein localization to membrane
GO:1990182 IMP exosomal secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172298 Rab11a-001 protein_coding Mus_musculus 0 774
ENSMUST00000169058 Rab11a-002 protein_coding Mus_musculus 0 765
ENSMUST00000004892 Rab11a-005 protein_coding Mus_musculus 0 756
ENSMUST00000167569 Rab11a-004 protein_coding Mus_musculus 0 608
ENSMUST00000165083 Rab11a-003 processed_transcript Mus_musculus 0 527
ENSMUST00000172444 Rab11a-008 retained_intron Mus_musculus 0 497
ENSMUST00000168366 Rab11a-007 protein_coding Mus_musculus 0 375
ENSMUST00000171100 Rab11a-006 protein_coding Mus_musculus 0 348
ENSMUST00000166857 Rab11a-009 processed_transcript Mus_musculus 0 313

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