C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB11A, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103769 RAB11A 9606 + 15:65726054-65891991 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261890 RAB11A-001 65869458-65891991 protein_coding
  ENST00000563580 RAB11A-007 65792447-65859751 processed_transcript
  ENST00000564910 RAB11A-002 65869456-65888247 protein_coding
  ENST00000565075 RAB11A-004 65869491-65887859 protein_coding
  ENST00000566233 RAB11A-009 65869464-65887736 protein_coding
  ENST00000567671 RAB11A-005 65870013-65887791 protein_coding
  ENST00000568850 RAB11A-006 65792447-65877819 processed_transcript
  ENST00000569304 RAB11A-008 65726054-65887923 processed_transcript
  ENST00000569896 RAB11A-003 65869541-65888635 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261890ENST00000564910ENST00000565075ENST00000566233ENST00000567671ENST00000569896
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261890 12.659±0.00 13.829±0.00 3.554±0.00 16.357±0.46 5.151±0.86 9.014±0.46 4.496±0.63 2.344±0.00 5.666±3.19 9.173±1.00 3.777±0.00 11.017±1.71 8.296±1.63 9.324±3.63
ENST00000564910 29.400±0.00 19.302±0.00 N/A 26.369±0.00 12.366±0.00 16.336±0.00 7.539±0.00 16.834±0.00 6.434±0.00 N/A 7.146±1.78 23.520±5.60 39.631±5.04 35.719±0.00
ENST00000565075 N/A N/A N/A N/A N/A N/A N/A N/A 8.746±0.00 N/A N/A N/A 25.095±2.94 33.653±0.00
ENST00000566233 N/A N/A N/A N/A 14.075±0.00 N/A 6.715±0.00 12.097±0.00 N/A N/A 7.421±0.00 N/A N/A N/A
ENST00000567671 N/A 39.296±0.00 N/A N/A 26.627±0.00 N/A 18.079±0.00 37.912±0.00 12.506±0.00 55.296±0.00 11.496±0.00 93.216±69.52 57.267±39.40 108.183±34.01
ENST00000569896 N/A N/A N/A 9.708±0.00 7.295±0.00 10.347±1.15 8.748±0.00 8.940±5.08 6.014±0.00 15.418±1.25 5.022±0.00 22.716±13.80 16.374±7.37 23.315±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VF CIL_0004VF_0002 CGP 15:65611366-65792293

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000910 IMP cytokinesis
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005771 IDA multivesicular body
GO:0005802 IDA trans-Golgi network
GO:0005886 IEA plasma membrane
GO:0006184 IDA:IEA GTP catabolic process
GO:0006833 TAS water transport
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0010796 IMP regulation of multivesicular body size
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IDA vesicle-mediated transport
GO:0019905 NAS syntaxin binding
GO:0030133 IEA transport vesicle
GO:0030424 IEA axon
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0031175 IMP neuron projection development
GO:0031489 IPI myosin V binding
GO:0032154 IDA cleavage furrow
GO:0032402 ISS melanosome transport
GO:0036258 IMP multivesicular body assembly
GO:0043234 IDA protein complex
GO:0045335 IDA phagocytic vesicle
GO:0045773 IEA positive regulation of axon extension
GO:0048169 IEA regulation of long-term neuronal synaptic plasticity
GO:0048227 NAS plasma membrane to endosome transport
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051223 IEA regulation of protein transport
GO:0055037 ISS recycling endosome
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0072659 IDA protein localization to plasma membrane
GO:0090150 IMP establishment of protein localization to membrane
GO:1990182 IMP exosomal secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000004771 Rab11a RAB11A, member RAS oncogene family protein_coding Mus_musculus

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