C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NDRG family member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000570248 NDRG4-009 ENSG00000103034 9606 + 16:58500143-58513618 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLiverOvaryENST00000570248
Transcript ID Bladder Brain Colon Kidney Liver Ovary
ENST00000570248 0.050±0.00 97.233±0.00 1.591±0.00 0.566±0.00 0.164±0.00 0.610±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IX CIL_0004IX_0001 CGP 16:58295080-58513628
CIL_0004IY CIL_0004IY_0001 CGP 16:58462846-58521181

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 NAS cytoplasm
GO:0006950 NAS response to stress
GO:0016049 NAS cell growth
GO:0030154 NAS cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073139 Ndrg4-001 protein_coding Mus_musculus 0 1574
ENSMUST00000166358 Ndrg4-010 nonsense_mediated_decay Mus_musculus 0 1478
ENSMUST00000041318 Ndrg4-003 protein_coding Mus_musculus 0 1478
ENSMUST00000080666 Ndrg4-002 protein_coding Mus_musculus 0 1249
ENSMUST00000160915 Ndrg4-005 processed_transcript Mus_musculus 0 869
ENSMUST00000160964 Ndrg4-004 protein_coding Mus_musculus 0 754
ENSDART00000151830 ndrg4-001 protein_coding Danio_rerio 0 717
ENSDART00000128808 ndrg4-004 protein_coding Danio_rerio 0 580
ENSMUST00000159851 Ndrg4-006 retained_intron Mus_musculus 0 446
ENSMUST00000162578 Ndrg4-007 processed_transcript Mus_musculus 0 436
ENSMUST00000159632 Ndrg4-008 retained_intron Mus_musculus 5.60519e-45 187
ENSMUST00000161314 Ndrg4-009 retained_intron Mus_musculus 2e-24 119

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