C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger and WD repeat domain 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000571750 RFWD3-002 ENSG00000168411 9606 - 16:74623429-74666870 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLungMuscleOvaryENST00000571750
Transcript ID Bladder Brain Colon Kidney Lung Muscle Ovary
ENST00000571750 0.322±0.00 0.463±0.00 1.406±0.00 0.119±0.00 0.685±0.00 0.225±0.00 0.818±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002I2 CIL_0002I2_0001 CGP 16:74451958-74666881
CIL_0002PQ CIL_0002PQ_0001 CGP 16:74621394-74700960

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002039 IPI p53 binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0008270 IEA zinc ion binding
GO:0010212 IDA response to ionizing radiation
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031571 IMP mitotic G1 DNA damage checkpoint
GO:0035861 IDA site of double-strand break
GO:0046872 IEA metal ion binding
GO:0097371 IPI MDM2/MDM4 family protein binding
GO:2000001 IMP regulation of DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121836 Gm5903-001 processed_pseudogene Mus_musculus 0 1306
ENSMUST00000038739 Rfwd3-201 protein_coding Mus_musculus 0 1304

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