C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 53 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000571805 VPS53-006 ENSG00000141252 9606 - 17:532708-714846 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLiverLungMuscleOvaryPlacentaENST00000571805
Transcript ID Bladder Brain Heart Liver Lung Muscle Ovary Placenta
ENST00000571805 1.890±0.00 2.337±0.00 1.339±0.00 1.442±0.00 2.777±0.00 1.824±0.00 1.689±0.00 1.284±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AN CIL_0006AN_0002 CGP 17:439978-721717

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000938 IDA GARP complex
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056601 Vps53-001 protein_coding Mus_musculus 0 2691
ENSMUST00000169734 Vps53-012 nonsense_mediated_decay Mus_musculus 0 2663
ENSMUST00000094015 Vps53-013 protein_coding Mus_musculus 0 2194
ENSMUST00000167114 Vps53-016 protein_coding Mus_musculus 0 1256
ENSMUST00000166752 Vps53-015 nonsense_mediated_decay Mus_musculus 0 1149
ENSMUST00000143163 Vps53-006 retained_intron Mus_musculus 0 1129
ENSMUST00000108419 Vps53-014 protein_coding Mus_musculus 0 1125
ENSMUST00000170143 Vps53-008 retained_intron Mus_musculus 0 913
ENSMUST00000166436 Vps53-009 protein_coding Mus_musculus 0 761
ENSMUST00000166084 Vps53-011 processed_transcript Mus_musculus 0 704
ENSMUST00000163878 Vps53-010 nonsense_mediated_decay Mus_musculus 0 588
ENSMUST00000141773 Vps53-004 processed_transcript Mus_musculus 0 462
ENSMUST00000143459 Vps53-005 processed_transcript Mus_musculus 0 392

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