C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phospholipase D2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000572940 PLD2-015 ENSG00000129219 9606 + 17:4807169-4823428 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000572940
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000572940 6.590±0.00 8.502±0.00 0.558±0.00 2.822±2.51 2.689±0.00 0.566±0.00 1.265±0.99 0.350±0.00 0.983±0.00 7.004±2.59 4.710±1.46 2.257±1.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001RF CIL_0001RF_0001 CGP 17:4796144-4823434
CIL_0001RG CIL_0001RG_0001 CGP 17:4807096-4898061

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004630 IEA phospholipase D activity
GO:0005515 IPI protein binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005886 TAS plasma membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006654 TAS phosphatidic acid biosynthetic process
GO:0006655 TAS phosphatidylglycerol biosynthetic process
GO:0007010 TAS cytoskeleton organization
GO:0007264 TAS small GTPase mediated signal transduction
GO:0008152 IEA metabolic process
GO:0016042 IEA lipid catabolic process
GO:0035091 IEA phosphatidylinositol binding
GO:0036465 TAS synaptic vesicle recycling
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0044281 TAS small molecule metabolic process
GO:0045087 TAS innate immune response
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0070290 IEA N-acylphosphatidylethanolamine-specific phospholipase D activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018429 Pld2-001 protein_coding Mus_musculus 0 2800
ENSMUST00000108557 Pld2-006 protein_coding Mus_musculus 0 2446
ENSMUST00000108556 Pld2-002 protein_coding Mus_musculus 0 1142
ENSMUST00000179806 Pld2-007 retained_intron Mus_musculus 0 606
ENSMUST00000146248 Pld2-004 retained_intron Mus_musculus 0 287

Loading