C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: derlin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000573547 DERL2-013 ENSG00000072849 9606 - 17:5474309-5480273 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000573547
Transcript ID Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000573547 8.827±0.00 6.179±0.00 5.223±0.00 26.972±0.00 14.340±0.00 9.942±0.00 3.315±0.00 11.822±0.00 14.366±3.56 24.060±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FL CIL_0000FL_0001 CGP 17:5440912-5486811
CIL_0002PM CIL_0002PM_0001 CGP 17:5471251-5490814

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171041 Derl2-007 protein_coding Mus_musculus 0 562
ENSMUST00000143850 Derl2-001 protein_coding Mus_musculus 0 562
ENSMUST00000108523 Derl2-002 protein_coding Mus_musculus 0 254
ENSMUST00000018586 Derl2-005 nonsense_mediated_decay Mus_musculus 0 244
ENSMUST00000140712 Derl2-003 retained_intron Mus_musculus 3e-36 156

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