C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000573891 CACNA1A-004 ENSG00000141837 9606 - 19:13231710-13255098 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENST00000573891
Transcript ID Placenta
ENST00000573891 0.090±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122053 Cacna1a-002 protein_coding Mus_musculus 0 582
ENSMUST00000121390 Cacna1a-001 protein_coding Mus_musculus 0 582
ENSMUST00000143215 Cacna1a-007 retained_intron Mus_musculus 0 505
ENSMUST00000141981 Cacna1a-008 retained_intron Mus_musculus 0 492
ENSMUST00000144879 Cacna1a-005 retained_intron Mus_musculus 0 303
ENSMUST00000153691 Cacna1a-010 processed_transcript Mus_musculus 0 254

Loading