C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144879 Cacna1a-005 ENSMUSG00000034656 10090 + 8:84601470-84634524 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverLungMusclePlacentaENSMUST00000144879
Transcript ID Breast Liver Lung Muscle Placenta
ENSMUST00000144879 0.757±0.00 0.079±0.01 0.618±0.06 0.298±0.00 0.216±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KV CIL_0006KV_0002 CGP 8:84388440-84662852

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360228 CACNA1A-001 protein_coding Homo_sapiens 0 832
ENST00000573710 CACNA1A-002 protein_coding Homo_sapiens 0 832
ENST00000573891 CACNA1A-004 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000574822 CACNA1A-003 processed_transcript Homo_sapiens 0 305
ENST00000585802 CACNA1A-012 protein_coding Homo_sapiens 0 832
ENST00000587525 CACNA1A-013 protein_coding Homo_sapiens 0 832
ENST00000593267 CACNA1A-010 retained_intron Homo_sapiens 9e-36 154
ENST00000614285 CACNA1A-201 protein_coding Homo_sapiens 0 832

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