C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: capicua transcriptional repressor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000575354 CIC-001 ENSG00000079432 9606 + 19:42284665-42295797 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000575354
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000575354 10.296±0.00 14.628±0.00 0.661±0.00 4.506±3.47 4.561±2.66 8.022±0.00 1.779±0.00 5.687±0.00 1.772±0.68 8.031±0.00 2.806±1.55 18.476±19.70 8.214±0.82 18.354±2.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000287 CIL_000287_0001 CGP 19:42247572-42295797
CIL_0005V7 CIL_0005V7_0001 CGP 19:42268537-42303546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0048286 IEA lung alveolus development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005578 Cic-201 protein_coding Mus_musculus 0 6117
ENSMUST00000163320 Cic-002 protein_coding Mus_musculus 0 6115
ENSMUST00000169266 Cic-001 protein_coding Mus_musculus 0 5958
ENSMUST00000167379 Cic-004 retained_intron Mus_musculus 0 5070
ENSMUST00000165239 Cic-015 protein_coding Mus_musculus 0 4194
ENSMUST00000168956 Cic-008 nonsense_mediated_decay Mus_musculus 0 704
ENSMUST00000163901 Cic-013 protein_coding Mus_musculus 0 455
ENSMUST00000163819 Cic-010 processed_transcript Mus_musculus 0 357
ENSMUST00000167162 Cic-011 retained_intron Mus_musculus 0 333
ENSMUST00000164820 Cic-014 protein_coding Mus_musculus 0 263
ENSMUST00000165742 Cic-005 retained_intron Mus_musculus 0 261
ENSMUST00000169743 Cic-009 processed_transcript Mus_musculus 3.9937e-43 182
ENSMUST00000164440 Cic-007 protein_coding Mus_musculus 6e-27 128

Loading