C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: diphthamide biosynthesis 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000575667 DPH1-002 ENSG00000108963 9606 + 17:2030159-2043024 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLungMusclePlacentaENST00000575667
Transcript ID Breast Colon Heart Lung Muscle Placenta
ENST00000575667 0.898±0.00 2.923±0.00 0.389±0.00 0.695±0.00 6.012±0.00 7.826±1.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093G CIL_00093G_0001 VISTA 17:1876478-2477942
CIL_0007RP CIL_0007RP_0001 VISTA 17:1878704-2480995
CIL_0007KQ CIL_0007KQ_0001 UCNEbase 17:1996571-2212289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0017183 IEA peptidyl-diphthamide biosynthetic process from peptidyl-histidine

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044949 Dph1-001 protein_coding Mus_musculus 0 1236
ENSMUST00000156489 Dph1-004 retained_intron Mus_musculus 0 780
ENSMUST00000139958 Dph1-002 protein_coding Mus_musculus 0 549
ENSMUST00000150910 Dph1-003 processed_transcript Mus_musculus 0 377
ENSMUST00000071562 Ovca2-001 protein_coding Mus_musculus 0 359
ENSMUST00000123489 Ovca2-002 processed_transcript Mus_musculus 0 357
ENSMUST00000148944 Dph1-005 processed_transcript Mus_musculus 0 344

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