C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: active BCR-related
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000575770 ABR-023 ENSG00000159842 9606 - 17:1050050-1058047 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLungOvaryENST00000575770
Transcript ID Colon Lung Ovary
ENST00000575770 43.746±0.00 13.100±0.00 20.063±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Q9 CIL_0001Q9_0001 CGP 17:799313-1003671
CIL_00012J CIL_00012J_0001 CGP 17:997117-1229021
CIL_0001Q6 CIL_0001Q6_0001 CGP 17:1003518-1271460

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108407 Abr-201 protein_coding Mus_musculus 0 608
ENSMUST00000108408 Abr-003 protein_coding Mus_musculus 0 608
ENSMUST00000065028 Abr-006 protein_coding Mus_musculus 0 608
ENSMUST00000072740 Abr-001 protein_coding Mus_musculus 0 608
ENSMUST00000094012 Abr-002 protein_coding Mus_musculus 0 608
ENSMUST00000130364 Abr-007 nonsense_mediated_decay Mus_musculus 0 248
ENSDART00000062073 BCR (1 of 2)-201 protein_coding Danio_rerio 2e-23 113
ENSDART00000137009 BCR (1 of 2)-001 protein_coding Danio_rerio 2e-23 113

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