C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: active BCR-related gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094012 Abr-002 ENSMUSG00000017631 10090 - 11:76416734-76509419 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012J CIL_00012J_0002 CGP 11:76406952-76622314
CIL_0001Q6 CIL_0001Q6_0002 CGP 11:76416734-76673676

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005096 TAS GTPase activator activity
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0007420 IGI brain development
GO:0016020 IEA membrane
GO:0030036 IGI actin cytoskeleton organization
GO:0030336 IGI negative regulation of cell migration
GO:0030675 IDA Rac GTPase activator activity
GO:0032496 IMP response to lipopolysaccharide
GO:0032855 IDA positive regulation of Rac GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0042472 IGI inner ear morphogenesis
GO:0043314 IGI negative regulation of neutrophil degranulation
GO:0043547 TAS positive regulation of GTPase activity
GO:0050728 IMP negative regulation of inflammatory response
GO:0050766 IGI positive regulation of phagocytosis
GO:0050885 IGI neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082965 protein_coding Danio_rerio 0 632
ENSDART00000062073 BCR (1 of 2)-201 protein_coding Danio_rerio 0 196
ENSDART00000137009 BCR (1 of 2)-001 protein_coding Danio_rerio 9.94922e-44 183
ENST00000291107 ABR-003 protein_coding Homo_sapiens 0 3341
ENST00000302538 ABR-001 protein_coding Homo_sapiens 0 3869
ENST00000327158 TIMM22-001 protein_coding Homo_sapiens 1.96182e-44 185
ENST00000536794 ABR-026 protein_coding Homo_sapiens 0 2571
ENST00000543210 ABR-005 protein_coding Homo_sapiens 0 1094
ENST00000544583 ABR-004 protein_coding Homo_sapiens 0 3871
ENST00000570441 ABR-030 protein_coding Homo_sapiens 0 750
ENST00000570525 ABR-031 protein_coding Homo_sapiens 0 436
ENST00000570688 ABR-011 retained_intron Homo_sapiens 0 246
ENST00000571022 ABR-019 processed_transcript Homo_sapiens 0 641
ENST00000571120 ABR-018 processed_transcript Homo_sapiens 0 691
ENST00000571383 ABR-017 processed_transcript Homo_sapiens 0 614
ENST00000571797 ABR-013 protein_coding Homo_sapiens 0 638
ENST00000571945 ABR-025 protein_coding Homo_sapiens 0 577
ENST00000572152 ABR-008 nonsense_mediated_decay Homo_sapiens 0 448
ENST00000572441 ABR-014 protein_coding Homo_sapiens 0 285
ENST00000572585 ABR-006 retained_intron Homo_sapiens 0 1299
ENST00000572650 ABR-010 retained_intron Homo_sapiens 0 281
ENST00000573325 ABR-028 retained_intron Homo_sapiens 0 337
ENST00000573559 ABR-012 protein_coding Homo_sapiens 0 627
ENST00000573667 ABR-027 retained_intron Homo_sapiens 0 571
ENST00000573895 ABR-022 processed_transcript Homo_sapiens 0 377
ENST00000574139 ABR-034 protein_coding Homo_sapiens 0 628
ENST00000574266 ABR-032 protein_coding Homo_sapiens 0 431
ENST00000574437 ABR-002 protein_coding Homo_sapiens 0 3973
ENST00000574544 ABR-024 protein_coding Homo_sapiens 0 671
ENST00000574875 ABR-021 retained_intron Homo_sapiens 0 241
ENST00000575770 ABR-023 processed_transcript Homo_sapiens 0 608
ENST00000575934 ABR-029 protein_coding Homo_sapiens 0 449
ENST00000576964 ABR-020 processed_transcript Homo_sapiens 0 704
ENST00000577052 ABR-015 processed_transcript Homo_sapiens 0 407
ENST00000611009 ABR-201 protein_coding Homo_sapiens 0 1515
ENST00000611021 ABR-204 protein_coding Homo_sapiens 0 3646
ENST00000612118 ABR-205 protein_coding Homo_sapiens 0 3864
ENST00000613981 ABR-202 protein_coding Homo_sapiens 0 3646
ENST00000615642 ABR-206 protein_coding Homo_sapiens 0 1515
ENST00000619569 ABR-207 protein_coding Homo_sapiens 0 2990
ENST00000620170 ABR-203 protein_coding Homo_sapiens 0 2990
ENST00000620619 ABR-208 protein_coding Homo_sapiens 0 3866

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