C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chemokine (C-X-C motif) ligand 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000576153 CXCL16-003 ENSG00000161921 9606 - 17:4733575-4736380 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonOvaryENST00000576153
Transcript ID Brain Colon Ovary
ENST00000576153 3.736±0.00 1.912±0.00 7.876±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000106 CIL_000106_0001 CGP 17:4710489-4733610
CIL_0001RD CIL_0001RD_0001 CGP 17:4731428-4739922
CIL_0001RE CIL_0001RE_0001 CGP 17:4733526-4746119

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153820 Pml-003 protein_coding Mus_musculus 0.00000004 64
ENSMUST00000172599 Clic1-002 retained_intron Mus_musculus 0.0000002 62
ENSMUST00000127431 Cpne7-004 retained_intron Mus_musculus 0.0000002 62
ENSMUST00000141278 Lypla1-004 retained_intron Mus_musculus 0.0000006 60
ENSMUST00000181377 Slc35a5-004 retained_intron Mus_musculus 0.0000006 60
ENSMUST00000029388 4930579G24Rik-001 protein_coding Mus_musculus 0.000002 58
ENSMUST00000035519 Otud7b-201 protein_coding Mus_musculus 0.000002 58
ENSMUST00000098849 Otud7b-002 protein_coding Mus_musculus 0.000002 58
ENSMUST00000090785 Otud7b-001 protein_coding Mus_musculus 0.000002 58
ENSMUST00000119599 Zfp597-003 processed_transcript Mus_musculus 0.0001 53
ENSMUST00000090522 Zfp597-001 protein_coding Mus_musculus 0.0001 53

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