C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000577226 PHF12-004 ENSG00000109118 9606 - 17:28905253-28951307 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungMuscleOvaryTestisENST00000577226
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000577226 0.709±0.00 2.592±0.00 0.567±0.13 1.532±0.00 0.505±0.00 0.363±0.00 1.152±0.91 0.777±0.00 1.510±0.47 1.053±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WH CIL_0000WH_0002 CGP 17:28897781-28951771

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049167 Phf12-001 protein_coding Mus_musculus 0 3928
ENSMUST00000108360 Phf12-002 protein_coding Mus_musculus 0 3720
ENSMUST00000153428 Phf12-003 protein_coding Mus_musculus 0 1138
ENSMUST00000153747 Phf12-005 nonsense_mediated_decay Mus_musculus 0 516
ENSMUST00000125079 Phf12-008 retained_intron Mus_musculus 0 455
ENSMUST00000131680 Phf12-004 nonsense_mediated_decay Mus_musculus 0 440
ENSMUST00000141620 Phf12-007 retained_intron Mus_musculus 0 353
ENSMUST00000123662 Phf12-006 nonsense_mediated_decay Mus_musculus 0 311
ENSMUST00000040624 Gltscr1l-201 protein_coding Mus_musculus 0.0001 55

Loading