C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BRCA1 interacting protein C-terminal helicase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000577598 BRIP1-002 ENSG00000136492 9606 - 17:61684772-61861539 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverLungMusclePlacentaENST00000577598
Transcript ID Brain Colon Liver Lung Muscle Placenta
ENST00000577598 0.067±0.00 0.040±0.00 0.056±0.00 0.037±0.00 0.049±0.00 0.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JV CIL_0007JV_0001 UCNEbase 17:61126460-61946035
CIL_00096P CIL_00096P_0001 VISTA 17:61515758-62116780
CIL_0006ZY CIL_0006ZY_0001 CGP 17:61681266-61928016

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004003 IEA ATP-dependent DNA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006139 IEA nucleobase-containing compound metabolic process
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0032508 IEA DNA duplex unwinding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044423 Brip1-001 protein_coding Mus_musculus 0 2599
ENSMUST00000123366 Brip1-003 processed_transcript Mus_musculus 0 237
ENSMUST00000149748 Brip1-002 processed_transcript Mus_musculus 0 235
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000006 58
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00007 55

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