C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | DEAD (Asp-Glu-Ala-Asp) box helicase 42 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000578681  |
DDX42-001 |
ENSG00000198231 |
9606 | + |
17:63773863-63819317  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0009B9 | CIL_0009B9_0001 | VISTA | 17:63374232-63977730 |
| CIL_0006Q3 | CIL_0006Q3_0001 | CGP | 17:63745250-63819317 |
| CIL_0006Q4 | CIL_0006Q4_0001 | CGP | 17:63773603-63830012 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003676 | IEA | nucleic acid binding |
| GO:0005515 | IPI | protein binding |
| GO:0005524 | IEA | ATP binding |
| GO:0005634 | IDA | nucleus |
| GO:0005737 | IDA | cytoplasm |
| GO:0006200 | IEA | ATP catabolic process |
| GO:0008026 | IEA | ATP-dependent helicase activity |
| GO:0008104 | IDA | protein localization |
| GO:0016020 | IDA | membrane |
| GO:0044822 | IDA | poly(A) RNA binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000021046
|
Ddx42-001 | protein_coding | Mus_musculus | 0 | 3869 |
|
ENSDART00000127297
|
ddx42-001 | protein_coding | Danio_rerio | 0 | 904 |
|
ENSMUST00000118480
|
Gm14745-001 | processed_pseudogene | Mus_musculus | 0 | 861 |
|
ENSDART00000076209
|
ddx42-201 | protein_coding | Danio_rerio | 0 | 850 |
|
ENSMUST00000152860
|
Ddx42-002 | processed_transcript | Mus_musculus | 0 | 350 |
|
ENSDART00000151504
|
ddx42-002 | retained_intron | Danio_rerio | 0.00000004 | 66 |
