C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000579221 SLC6A4-003 ENSG00000108576 9606 - 17:30197921-30211369 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000579221
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000579221 0.114±0.00 0.163±0.00 0.379±0.00 0.169±0.00 0.448±0.00 0.062±0.00 9.104±7.17 0.134±0.00 0.445±0.00 9.624±1.69 0.216±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004GG CIL_0004GG_0002 CGP 17:30194319-30292056

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0006836 IEA neurotransmitter transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021195 Slc6a4-001 protein_coding Mus_musculus 0 584
ENSMUST00000108402 Slc6a4-003 protein_coding Mus_musculus 0 584

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