C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein, fox-1 homolog (C. elegans) 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000580155 RBFOX3-004 ENSG00000167281 9606 - 17:79090816-79516148 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000580155
Transcript ID Ovary
ENST00000580155 0.151±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002YN CIL_0002YN_0001 CGP 17:79074939-79516148
CIL_0002XY CIL_0002XY_0001 CGP 17:79089345-79742222

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IEA regulation of alternative mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043025 IEA neuronal cell body
GO:0043204 IEA perikaryon
GO:0043484 IEA regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103023 Rbfox3-001 protein_coding Mus_musculus 0 1417
ENSMUST00000106278 Rbfox3-008 protein_coding Mus_musculus 0 1360
ENSMUST00000120061 Rbfox3-009 protein_coding Mus_musculus 0 1293
ENSMUST00000017576 Rbfox3-002 protein_coding Mus_musculus 0 1094
ENSMUST00000117731 Rbfox3-007 protein_coding Mus_musculus 0 1014
ENSMUST00000136551 Rbfox3-004 protein_coding Mus_musculus 0 730
ENSMUST00000154746 Rbfox3-010 protein_coding Mus_musculus 0 723
ENSMUST00000069343 Rbfox3-003 protein_coding Mus_musculus 0 640
ENSDART00000113140 rbfox3l-201 protein_coding Danio_rerio 0 392
ENSDART00000146856 rbfox3l-002 protein_coding Danio_rerio 3e-35 154
ENSDART00000132949 rbfox3l-001 protein_coding Danio_rerio 3e-35 154

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