C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000580613 ZNF18-201 ENSG00000154957 9606 - 17:11977445-11992917 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLungMuscleOvaryPlacentaTestisENST00000580613
Transcript ID Brain Breast Colon Lung Muscle Ovary Placenta Testis
ENST00000580613 0.199±0.00 0.459±0.00 0.350±0.00 0.842±0.00 0.262±0.00 2.132±0.00 1.023±0.54 5.632±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WK CIL_0008WK_0001 VISTA 17:11924684-12528146

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA:IBA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071465 Zkscan6-002 protein_coding Mus_musculus 0 1395
ENSMUST00000018491 Zkscan6-001 protein_coding Mus_musculus 0 1395
ENSDART00000122468 CU672268.1-201 protein_coding Danio_rerio 0.000000000009 77
ENSDART00000106339 CU929037.1-201 protein_coding Danio_rerio 0.000000000009 77
ENSMUST00000073833 Zfp111-201 protein_coding Mus_musculus 0.0000009 60
ENSMUST00000056683 Zfp111-002 protein_coding Mus_musculus 0.0000009 60
ENSMUST00000086006 Zfp111-001 protein_coding Mus_musculus 0.0000009 60
ENSDART00000127877 zgc:113443-204 protein_coding Danio_rerio 0.00001 57
ENSDART00000081389 zgc:113443-201 protein_coding Danio_rerio 0.00001 57
ENSDART00000106504 zgc:113443-001 protein_coding Danio_rerio 0.00001 57
ENSMUST00000172448 Zfp27-201 protein_coding Mus_musculus 0.00004 55
ENSMUST00000159920 Zfp27-002 protein_coding Mus_musculus 0.00004 55
ENSMUST00000053521 Zfp27-003 protein_coding Mus_musculus 0.00004 55
ENSMUST00000161904 Zfp27-004 protein_coding Mus_musculus 0.00004 55
ENSMUST00000162592 Zfp27-001 protein_coding Mus_musculus 0.00004 55
ENSMUST00000032622 Zfp773-201 protein_coding Mus_musculus 0.00004 55

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