C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: RNA binding protein, fox-1 homolog (C. elegans) 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000582043 RBFOX3-007 ENSG00000167281 9606 - 17:79090800-79235805 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverOvaryENST00000582043
Transcript ID Bladder Liver Ovary
ENST00000582043 0.264±0.00 2.708±0.00 0.464±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002YN CIL_0002YN_0001 CGP 17:79074939-79516148
CIL_0002XY CIL_0002XY_0001 CGP 17:79089345-79742222

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069343 Rbfox3-003 protein_coding Mus_musculus 0 1489
ENSMUST00000117731 Rbfox3-007 protein_coding Mus_musculus 0 878
ENSMUST00000017576 Rbfox3-002 protein_coding Mus_musculus 0 737
ENSMUST00000120061 Rbfox3-009 protein_coding Mus_musculus 0 619
ENSMUST00000106278 Rbfox3-008 protein_coding Mus_musculus 0 619
ENSMUST00000103023 Rbfox3-001 protein_coding Mus_musculus 0 619
ENSMUST00000136551 Rbfox3-004 protein_coding Mus_musculus 0 560
ENSMUST00000154746 Rbfox3-010 protein_coding Mus_musculus 0 344
ENSDART00000146856 rbfox3l-002 protein_coding Danio_rerio 0 237
ENSDART00000132949 rbfox3l-001 protein_coding Danio_rerio 0 237
ENSDART00000113140 rbfox3l-201 protein_coding Danio_rerio 2e-35 154

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