C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNF receptor-associated factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000584944 TRAF4-016 ENSG00000076604 9606 + 17:28746743-28748297 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastENST00000584944
Transcript ID Brain Breast
ENST00000584944 1.945±0.00 2.595±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZR CIL_0004ZR_0002 CGP 17:28725897-28750958

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007250 IEA activation of NF-kappaB-inducing kinase activity
GO:0008270 IEA zinc ion binding
GO:0046330 IEA positive regulation of JNK cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017530 Traf4-001 protein_coding Mus_musculus 0 442
ENSMUST00000149437 Traf4-002 retained_intron Mus_musculus 0 442
ENSMUST00000148218 Traf4-003 retained_intron Mus_musculus 0 233

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