C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000585202 SRSF2-004 ENSG00000161547 9606 - 17:76734123-76737308 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENST00000585202
Transcript ID Placenta
ENST00000585202 33.945±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KE CIL_0003KE_0002 CGP 17:76732978-76738522
CIL_0003U9 CIL_0003U9_0002 CGP 17:76734115-76781449

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003714 NAS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006397 TAS mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016607 IDA nuclear speck
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:2001141 NAS regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092404 Srsf2-001 protein_coding Mus_musculus 0 881
ENSMUST00000190993 Srsf2-201 protein_coding Mus_musculus 0 802
ENSMUST00000136914 Srsf2-002 nonsense_mediated_decay Mus_musculus 0 802
ENSMUST00000176834 Srsf2-003 nonsense_mediated_decay Mus_musculus 0 712
ENSMUST00000138484 Srsf2-004 retained_intron Mus_musculus 0 652
ENSMUST00000175930 Mettl23-006 retained_intron Mus_musculus 0 577
ENSMUST00000177429 Srsf2-005 processed_transcript Mus_musculus 0 508
ENSMUST00000139954 Mfsd11-002 nonsense_mediated_decay Mus_musculus 0 401
ENSDART00000146446 srsf2a-005 nonsense_mediated_decay Danio_rerio 1e-38 165
ENSDART00000153102 srsf2a-009 nonsense_mediated_decay Danio_rerio 1e-38 165
ENSDART00000153210 srsf2a-010 retained_intron Danio_rerio 1e-38 165
ENSDART00000080173 srsf2a-001 protein_coding Danio_rerio 1e-37 161

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