C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 2a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000080173 srsf2a-001 ENSDARG00000057484 7955 - 12:33407774-33411488 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000080173
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000080173 54.212±0.00 23.904±6.53 20.767±7.15 5.855±0.00 22.771±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092404 Srsf2-001 protein_coding Mus_musculus 0 195
ENSMUST00000136914 Srsf2-002 nonsense_mediated_decay Mus_musculus 3e-39 167
ENSMUST00000138484 Srsf2-004 retained_intron Mus_musculus 4e-39 167
ENSMUST00000175930 Mettl23-006 retained_intron Mus_musculus 6.99949e-42 176
ENSMUST00000176834 Srsf2-003 nonsense_mediated_decay Mus_musculus 1e-39 167
ENSMUST00000177429 Srsf2-005 processed_transcript Mus_musculus 8.99999e-40 167
ENSMUST00000190993 Srsf2-201 protein_coding Mus_musculus 3e-39 167
ENST00000359995 SRSF2-001 protein_coding Homo_sapiens 1.4013e-45 189
ENST00000392485 SRSF2-003 protein_coding Homo_sapiens 1.4013e-45 189
ENST00000452355 SRSF2-005 nonsense_mediated_decay Homo_sapiens 1e-37 161
ENST00000582449 SRSF2-006 retained_intron Homo_sapiens 0 189
ENST00000585202 SRSF2-004 nonsense_mediated_decay Homo_sapiens 1e-37 161
ENST00000586778 SRSF2-016 retained_intron Homo_sapiens 1e-37 161
ENST00000589919 SRSF2-017 retained_intron Homo_sapiens 6e-38 161

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