C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuole membrane protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000062716 VMP1 9606 + 17:59707192-59842255 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262291 VMP1-001 59707465-59841092 protein_coding
  ENST00000536180 VMP1-201 59707668-59841092 protein_coding
  ENST00000585847 VMP1-009 59707651-59765068 nonsense_mediated_decay
  ENST00000586245 VMP1-011 59707650-59765111 nonsense_mediated_decay
  ENST00000587259 VMP1-007 59729715-59737517 protein_coding
  ENST00000587470 VMP1-012 59837951-59840315 retained_intron
  ENST00000587945 VMP1-008 59707664-59773881 protein_coding
  ENST00000588131 VMP1-005 59707671-59735744 retained_intron
  ENST00000588617 VMP1-013 59837855-59840207 processed_transcript
  ENST00000588915 VMP1-002 59707192-59707676 processed_transcript
  ENST00000589823 VMP1-017 59707696-59765138 protein_coding
  ENST00000591315 VMP1-003 59707718-59738947 protein_coding
  ENST00000591782 VMP1-016 59837628-59840223 processed_transcript
  ENST00000591877 VMP1-014 59773754-59840024 protein_coding
  ENST00000592106 VMP1-006 59707706-59737474 protein_coding
  ENST00000592619 VMP1-015 59735338-59840106 nonsense_mediated_decay
  ENST00000592790 VMP1-004 59837931-59842255 retained_intron
  ENST00000593168 VMP1-010 59707648-59773804 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonKidneyLiverLungOvaryENST00000592790
Transcript ID Adrenal Bladder Breast Colon Kidney Liver Lung Ovary
ENST00000592790 14.821±0.00 16.322±0.00 65.388±0.00 24.398±0.00 19.354±7.11 32.766±0.00 26.360±13.39 46.781±21.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081F CIL_00081F_0001 VISTA 17:59485788-60087415
CIL_0008Y2 CIL_0008Y2_0001 VISTA 17:59536739-60138754
CIL_0008VS CIL_0008VS_0001 VISTA 17:59556856-60159441
CIL_000567 CIL_000567_0002 CGP 17:59707192-59892945

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000407 IEA pre-autophagosomal structure
GO:0000421 ISS autophagic vacuole membrane
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0006914 IEA autophagy
GO:0007566 IEA embryo implantation
GO:0010506 ISS regulation of autophagy
GO:0016021 IEA integral component of membrane
GO:0016337 IMP single organismal cell-cell adhesion
GO:0034329 IMP cell junction assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012450 vmp1 vacuole membrane protein 1 protein_coding Danio_rerio
ENSMUSG00000018171 Vmp1 vacuole membrane protein 1 protein_coding Mus_musculus

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