C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) mitochondrial (DNA directed)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588649 POLRMT-001 ENSG00000099821 9606 - 19:617223-633604 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000588649
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000588649 8.251±0.00 9.812±0.00 0.473±0.00 5.619±4.30 5.791±5.47 4.965±3.92 7.962±0.00 5.813±3.44 3.044±2.22 2.855±0.00 19.722±17.99 9.956±6.77 6.330±1.81 34.843±2.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_0005ZK CIL_0005ZK_0002 CGP 19:589893-633604
CIL_0005ZL CIL_0005ZL_0002 CGP 19:617223-643703

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 TAS:IEA DNA-directed RNA polymerase activity
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006351 IEA transcription, DNA-templated
GO:0006390 TAS transcription from mitochondrial promoter
GO:0006391 TAS transcription initiation from mitochondrial promoter
GO:0010467 TAS gene expression
GO:0042645 IDA mitochondrial nucleoid
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020580 Polrmt-001 protein_coding Mus_musculus 0 1622
ENSMUST00000159082 Polrmt-003 retained_intron Mus_musculus 0 1387
ENSMUST00000159016 Polrmt-002 protein_coding Mus_musculus 0 1230
ENSMUST00000162694 Polrmt-005 nonsense_mediated_decay Mus_musculus 0 963
ENSMUST00000161765 Polrmt-004 retained_intron Mus_musculus 0 963

Loading