C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005ZK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061665-ENSDARG00000061658 CGP 7955 22:19176868-19420640
GeneTranscriptPositionBiotype
ENSDARG00000056074 (fgf22)
fibroblast growth factor 22 		ENSDART00000078508 (fgf22-201) 19336981-19377255 protein_coding
ENSDARG00000061658 (POLRMT)
polymerase (RNA) mitochondrial (DNA directed) 		ENSDART00000088169 (POLRMT-201) 19242091-19420640 protein_coding
ENSDART00000137758 (POLRMT-001) 19416862-19420585 protein_coding
ENSDARG00000061665 (hcn2b)
hyperpolarization activated cyclic nucleotide-gated potassium channel 2b 		ENSDART00000136390 (hcn2b-001) 19176868-19232055 protein_coding
ENSDARG00000085352 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000120752 (5S_rRNA.1139-201) 19258660-19258778 rRNA

Danio rerio Ensembl (Zv9)

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CIL_0005ZK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000099822-ENSG00000099821 CGP 9606 19:589893-633604
GeneTranscriptPositionBiotype
ENSG00000099821 (POLRMT)
polymerase (RNA) mitochondrial (DNA directed) 		ENST00000587057 (POLRMT-005) 617228-618760 retained_intron
ENST00000588649 (POLRMT-001) 617223-633604 protein_coding
ENST00000589961 (POLRMT-003) 617646-619226 retained_intron
ENST00000590336 (POLRMT-004) 617431-619016 protein_coding
ENST00000590573 (POLRMT-002) 623454-630168 protein_coding
ENST00000590709 (POLRMT-009) 622535-625509 retained_intron
ENST00000592633 (POLRMT-007) 617224-617993 retained_intron
ENST00000592863 (POLRMT-006) 629636-633525 nonsense_mediated_decay
ENSG00000099822 (HCN2)
hyperpolarization activated cyclic nucleotide-gated potassium channel 2 		ENST00000251287 (HCN2-001) 589893-617159 protein_coding
ENSG00000267036 (AC005559.3)
 ENST00000589661 (AC005559.3-001) 590430-591300 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0005ZK_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020331-ENSMUSG00000020329 CGP 10090 10:79716634-79746581
GeneTranscriptPositionBiotype
ENSMUSG00000020329 (Polrmt)
polymerase (RNA) mitochondrial (DNA directed) 		ENSMUST00000020580 (Polrmt-001) 79736130-79746579 protein_coding
ENSMUST00000159016 (Polrmt-002) 79736130-79746581 protein_coding
ENSMUST00000159082 (Polrmt-003) 79736128-79746573 retained_intron
ENSMUST00000159289 (Polrmt-011) 79736172-79736768 retained_intron
ENSMUST00000160595 (Polrmt-008) 79736129-79736783 processed_transcript
ENSMUST00000160838 (Polrmt-013) 79736207-79737686 retained_intron
ENSMUST00000161098 (Polrmt-010) 79736173-79737713 retained_intron
ENSMUST00000161375 (Polrmt-007) 79743667-79746573 processed_transcript
ENSMUST00000161662 (Polrmt-009) 79736127-79739374 protein_coding
ENSMUST00000161765 (Polrmt-004) 79736123-79746573 retained_intron
ENSMUST00000162679 (Polrmt-012) 79738088-79739375 retained_intron
ENSMUST00000162687 (Polrmt-006) 79736577-79738631 retained_intron
ENSMUST00000162694 (Polrmt-005) 79736174-79746571 nonsense_mediated_decay
ENSMUSG00000020331 (Hcn2)
hyperpolarization-activated, cyclic nucleotide-gated K+ 2 		ENSMUST00000020581 (Hcn2-201) 79716634-79736108 protein_coding
ENSMUST00000099513 (Hcn2-001) 79716634-79736108 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ZK_0001ENSDARG00000056074ENSDART00000078508ENSDARG00000061658ENSDART00000088169ENSDART00000137758ENSDARG00000061665ENSDART00000136390ENSDARG00000085352ENSDART00000120752CIL_0005ZK_0002ENSG00000099821ENST00000587057ENST00000588649ENST00000589961ENST00000590336ENST00000590573ENST00000590709ENST00000592633ENST00000592863ENSG00000099822ENST00000251287ENSG00000267036ENST00000589661CIL_0005ZK_0003ENSMUSG00000020329ENSMUST00000020580ENSMUST00000159016ENSMUST00000159082ENSMUST00000159289ENSMUST00000160595ENSMUST00000160838ENSMUST00000161098ENSMUST00000161375ENSMUST00000161662ENSMUST00000161765ENSMUST00000162679ENSMUST00000162687ENSMUST00000162694ENSMUSG00000020331ENSMUST00000020581ENSMUST00000099513
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ZK_0001ENSDARG00000056074ENSDART00000078508ENSDARG00000061658ENSDART00000088169ENSDARG00000061665ENSDART00000136390ENSDARG00000085352ENSDART00000120752CIL_0005ZK_0002ENSG00000099821ENST00000587057ENST00000588649ENST00000589961ENST00000590336ENST00000590573ENST00000590709ENST00000592633ENSG00000099822ENST00000251287ENSG00000267036ENST00000589661CIL_0005ZK_0003ENSMUSG00000020329ENSMUST00000020580ENSMUST00000159016ENSMUST00000159082ENSMUST00000160595ENSMUST00000161098ENSMUST00000161662ENSMUST00000161765ENSMUST00000162679ENSMUST00000162694ENSMUSG00000020331ENSMUST00000020581ENSMUST00000099513
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000056074 ENSDART00000078508 N/A N/A N/A 0.491±0.17 N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A N/A
ENSDARG00000061658 ENSDART00000088169 N/A N/A N/A 1.082±0.90 N/A N/A 2.020±0.11 1.671±1.60 0.946±0.00 N/A 1.224±0.00 N/A N/A N/A
ENSDART00000137758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000061665 ENSDART00000136390 N/A N/A N/A 4.960±2.83 N/A N/A 25.427±0.54 0.356±0.15 0.079±0.00 N/A 0.728±0.00 N/A N/A N/A
ENSDARG00000085352 ENSDART00000120752 N/A N/A N/A 8.291±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000099821 ENST00000587057 N/A 7.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588649 8.251±0.00 9.812±0.00 0.473±0.00 5.619±4.30 5.791±5.47 4.965±3.92 7.962±0.00 5.813±3.44 3.044±2.22 2.855±0.00 19.722±17.99 9.956±6.77 6.330±1.81 34.843±2.37
ENST00000589961 N/A N/A N/A N/A N/A N/A N/A N/A 5.130±0.00 N/A 3.001±0.00 12.304±0.00 N/A N/A
ENST00000590336 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.527±0.00 N/A N/A 9.124±0.00 N/A
ENST00000590573 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.756±0.00 N/A 2.805±0.00 N/A N/A
ENST00000590709 N/A N/A N/A N/A N/A N/A 0.678±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000592633 N/A N/A N/A N/A N/A N/A N/A 12.643±0.00 4.384±2.18 N/A N/A N/A N/A N/A
ENST00000592863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000099822 ENST00000251287 0.155±0.00 0.356±0.00 0.090±0.00 24.527±21.03 0.092±0.00 0.468±0.00 2.588±2.51 1.222±0.00 0.073±0.00 0.129±0.00 0.023±0.00 0.091±0.04 0.245±0.06 4.506±2.00
ENSG00000267036 ENST00000589661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.342±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020329 ENSMUST00000020580 11.494±0.97 17.857±3.77 7.263±0.45 8.213±4.81 14.838±2.88 16.066±1.75 9.289±0.95 14.220±2.70 7.152±1.40 10.434±0.75 6.675±0.70 14.685±7.25 5.358±2.96 6.348±0.91
ENSMUST00000159016 N/A N/A N/A 6.845±0.00 0.268±0.00 N/A N/A N/A N/A N/A N/A 2.421±0.76 2.280±0.00 1.558±0.00
ENSMUST00000159082 N/A 2.952±0.62 N/A 3.183±0.00 0.252±0.00 N/A N/A N/A 1.905±0.00 2.536±0.00 1.597±0.00 2.765±1.01 N/A N/A
ENSMUST00000159289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160595 N/A N/A N/A N/A 5.598±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161098 N/A N/A N/A N/A 1.354±0.00 N/A N/A N/A N/A N/A N/A 6.524±0.00 5.532±0.00 2.546±0.00
ENSMUST00000161375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161662 N/A N/A N/A N/A 1.550±0.00 N/A N/A 7.034±0.00 N/A N/A 4.432±0.00 N/A N/A N/A
ENSMUST00000161765 2.001±0.00 N/A N/A 1.343±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162679 N/A N/A N/A 12.153±0.00 N/A N/A N/A N/A N/A N/A N/A 12.079±0.00 9.160±0.02 3.186±0.00
ENSMUST00000162687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162694 N/A N/A N/A N/A N/A 2.313±0.00 N/A N/A N/A N/A N/A 1.867±0.00 1.637±0.00 N/A
ENSMUSG00000020331 ENSMUST00000020581 N/A 1.918±1.42 N/A 68.643±0.00 0.667±0.13 1.319±0.47 3.416±0.75 0.167±0.01 0.109±0.07 0.407±0.00 0.192±0.00 1.474±0.94 5.006±4.09 0.205±0.16
ENSMUST00000099513 0.654±0.18 4.117±1.43 0.493±0.10 8.423±6.02 0.361±0.12 6.547±0.75 6.678±2.63 0.531±0.16 0.136±0.06 0.900±0.26 0.504±0.16 2.541±0.93 4.204±2.73 0.236±0.06

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