C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: troponin T type 1 (skeletal, slow)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588981 TNNT1-002 ENSG00000105048 9606 - 19:55132794-55149354 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RJ CIL_0003RJ_0001 CGP 19:55090913-55149354
CIL_00065K CIL_00065K_0001 CGP 19:55132794-55157773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003009 IMP skeletal muscle contraction
GO:0005523 IMP tropomyosin binding
GO:0005829 TAS cytosol
GO:0005861 IMP:IEA troponin complex
GO:0006937 IEA regulation of muscle contraction
GO:0030049 TAS muscle filament sliding
GO:0031014 IEA troponin T binding
GO:0031444 IEA slow-twitch skeletal muscle fiber contraction
GO:0045932 IDA negative regulation of muscle contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108587 Tnnt1-002 protein_coding Mus_musculus 0 671
ENSMUST00000071798 Tnnt1-001 protein_coding Mus_musculus 0 662
ENSMUST00000178163 Tnnt1-201 protein_coding Mus_musculus 0 623
ENSMUST00000166959 Tnnt1-006 protein_coding Mus_musculus 0 617
ENSMUST00000166268 Tnnt1-011 protein_coding Mus_musculus 0 525
ENSMUST00000163710 Tnnt1-003 protein_coding Mus_musculus 0 523
ENSMUST00000166161 Tnnt1-004 protein_coding Mus_musculus 0 518
ENSMUST00000169571 Tnnt1-008 retained_intron Mus_musculus 0 324

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