C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: troponin T1, skeletal, slow
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166161 Tnnt1-004 ENSMUSG00000064179 10090 - 7:4504755-4514368 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungMusclePlacentaENSMUST00000166161
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Muscle Placenta
ENSMUST00000166161 0.819±0.07 21.907±0.00 0.384±0.16 0.627±0.00 0.867±0.00 0.587±0.38 0.219±0.00 24.459±17.11 11.370±15.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RJ CIL_0003RJ_0002 CGP 7:4481520-4516382
CIL_00065K CIL_00065K_0002 CGP 7:4504570-4524229

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005861 IEA troponin complex
GO:0006937 IEA regulation of muscle contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000236918 TNNT2-201 protein_coding Homo_sapiens 2e-39 167
ENST00000291901 TNNT1-003 protein_coding Homo_sapiens 0 732
ENST00000356783 TNNT1-001 protein_coding Homo_sapiens 0 787
ENST00000367315 TNNT2-203 protein_coding Homo_sapiens 4e-37 159
ENST00000367317 TNNT2-204 protein_coding Homo_sapiens 7.9874e-44 182
ENST00000367318 TNNT2-005 protein_coding Homo_sapiens 2e-39 167
ENST00000367322 TNNT2-001 protein_coding Homo_sapiens 0 198
ENST00000412633 TNNT2-012 protein_coding Homo_sapiens 0.00000000002 73
ENST00000421663 TNNT2-205 protein_coding Homo_sapiens 0 198
ENST00000422165 TNNT2-014 protein_coding Homo_sapiens 0.00000000000003 82
ENST00000438742 TNNT2-002 protein_coding Homo_sapiens 7.00649e-44 182
ENST00000455702 TNNT2-010 protein_coding Homo_sapiens 6e-28 128
ENST00000458432 TNNT2-206 protein_coding Homo_sapiens 0 198
ENST00000466570 TNNT2-006 processed_transcript Homo_sapiens 8e-28 128
ENST00000491504 TNNT2-004 retained_intron Homo_sapiens 5e-39 167
ENST00000503459 TNNT2-022 retained_intron Homo_sapiens 7e-28 128
ENST00000509001 TNNT2-008 protein_coding Homo_sapiens 3e-39 167
ENST00000515042 TNNT2-019 retained_intron Homo_sapiens 3e-34 150
ENST00000536926 TNNT1-201 protein_coding Homo_sapiens 0 752
ENST00000585321 TNNT1-011 protein_coding Homo_sapiens 0 741
ENST00000587089 TNNT1-014 nonsense_mediated_decay Homo_sapiens 0 717
ENST00000587465 TNNT1-012 protein_coding Homo_sapiens 0 732
ENST00000587758 TNNT1-005 protein_coding Homo_sapiens 0 787
ENST00000588426 TNNT1-007 protein_coding Homo_sapiens 0 490
ENST00000588981 TNNT1-002 protein_coding Homo_sapiens 0 518
ENST00000589745 TNNT1-016 protein_coding Homo_sapiens 0 496
ENST00000593046 TNNT1-009 protein_coding Homo_sapiens 0 514
ENST00000593194 TNNT1-015 protein_coding Homo_sapiens 0 682

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