C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000594806 TRIM28-005 ENSG00000130726 9606 + 19:58544457-58547888 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungPlacentaTestisENST00000594806
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Placenta Testis
ENST00000594806 3.291±0.00 3.813±0.00 2.922±0.00 3.737±0.00 3.863±0.00 5.030±0.00 2.859±0.00 33.980±0.00 46.344±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070O CIL_00070O_0001 CGP 19:58513530-58550722
CIL_0006Z2 CIL_0006Z2_0001 CGP 19:58544091-58555124

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005622 IEA intracellular
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005705 Trim28-001 protein_coding Mus_musculus 0 821
ENSMUST00000148354 Trim28-003 retained_intron Mus_musculus 0 255
ENSMUST00000128951 Trim28-004 retained_intron Mus_musculus 7e-29 132
ENSMUST00000142421 Trim28-002 retained_intron Mus_musculus 7e-29 132

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