C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005705 Trim28-001 ENSMUSG00000005566 10090 + 7:13024152-13031035 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005705
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005705 58.153±25.79 53.452±6.90 45.327±1.19 96.528±48.16 43.182±8.57 49.572±1.72 18.792±3.92 28.942±3.32 36.659±22.93 41.489±0.85 13.313±1.08 120.245±27.35 58.685±23.57 107.346±31.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070O CIL_00070O_0002 CGP 7:13004936-13031035
CIL_0006Z2 CIL_0006Z2_0002 CGP 7:13024152-13034777

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000785 IDA chromatin
GO:0001701 IMP in utero embryonic development
GO:0001837 IDA epithelial to mesenchymal transition
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003713 IDA transcription coactivator activity
GO:0003714 IEA transcription corepressor activity
GO:0004672 IDA protein kinase activity
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005719 IDA nuclear euchromatin
GO:0005720 IDA nuclear heterochromatin
GO:0006281 IEA DNA repair
GO:0006351 IEA transcription, DNA-templated
GO:0006468 IDA protein phosphorylation
GO:0007566 IMP embryo implantation
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0016925 IEA protein sumoylation
GO:0031625 IEA ubiquitin protein ligase binding
GO:0035851 ISS Krueppel-associated box domain binding
GO:0042993 ISS positive regulation of transcription factor import into nucleus
GO:0043045 IMP DNA methylation involved in embryo development
GO:0043565 IDA sequence-specific DNA binding
GO:0044822 IEA poly(A) RNA binding
GO:0045087 IEA innate immune response
GO:0045739 IEA positive regulation of DNA repair
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046777 IDA protein autophosphorylation
GO:0051259 IEA protein oligomerization
GO:0060028 IMP convergent extension involved in axis elongation
GO:0060669 IMP embryonic placenta morphogenesis
GO:0070087 IEA chromo shadow domain binding
GO:1901536 IMP negative regulation of DNA demethylation
GO:1902187 IEA negative regulation of viral release from host cell
GO:2000653 IMP regulation of genetic imprinting

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253024 TRIM28-001 protein_coding Homo_sapiens 0 2830
ENST00000341753 TRIM28-003 protein_coding Homo_sapiens 0 2226
ENST00000594806 TRIM28-005 protein_coding Homo_sapiens 0 821
ENST00000597136 TRIM28-002 protein_coding Homo_sapiens 0 1520
ENST00000597172 TRIM28-009 retained_intron Homo_sapiens 0 686
ENST00000597423 TRIM28-007 retained_intron Homo_sapiens 0 538
ENST00000597618 TRIM28-008 retained_intron Homo_sapiens 0 424
ENST00000597995 TRIM28-010 retained_intron Homo_sapiens 0 821
ENST00000598355 TRIM28-015 retained_intron Homo_sapiens 0 647
ENST00000600840 TRIM28-014 retained_intron Homo_sapiens 0 368
ENST00000601150 TRIM28-011 retained_intron Homo_sapiens 0 699

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