C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000597136 TRIM28-002 ENSG00000130726 9606 + 19:58548294-58550722 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000597136
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000597136 34.785±0.00 52.078±0.00 23.245±0.00 40.618±0.00 53.591±0.00 26.479±0.00 8.226±0.00 32.865±0.00 45.421±0.00 70.492±15.57 37.263±14.87 62.940±23.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070O CIL_00070O_0001 CGP 19:58513530-58550722
CIL_0006Z2 CIL_0006Z2_0001 CGP 19:58544091-58555124

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005705 Trim28-001 protein_coding Mus_musculus 0 1520
ENSMUST00000123778 Trim28-009 retained_intron Mus_musculus 0 438
ENSMUST00000129122 Trim28-008 retained_intron Mus_musculus 0 230

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