C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000600447 PPFIA4-006 ENSG00000143847 9606 + 1:203053703-203055557 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverLungENST00000600447
Transcript ID Breast Colon Heart Liver Lung
ENST00000600447 1.476±0.00 0.747±0.00 2.768±0.00 0.751±0.00 2.081±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TW CIL_0000TW_0002 CGP 1:203007386-203078740
CIL_0000TV CIL_0000TV_0002 CGP 1:203026498-203086036

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000189361 Ppfia4-003 protein_coding Mus_musculus 0 344
ENSMUST00000186730 Ppfia4-007 protein_coding Mus_musculus 0 344
ENSMUST00000168515 Ppfia4-001 protein_coding Mus_musculus 0 344

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