C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143847 PPFIA4 9606 + 1:203026498-203078740 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272198 PPFIA4-002 203051183-203078736 protein_coding
  ENST00000295706 PPFIA4-201 203034484-203078735 protein_coding
  ENST00000367240 PPFIA4-001 203026498-203078736 protein_coding
  ENST00000447715 PPFIA4-005 203034484-203078740 protein_coding
  ENST00000486360 PPFIA4-003 203062959-203078735 retained_intron
  ENST00000594572 PPFIA4-012 203076003-203076981 processed_transcript
  ENST00000594656 PPFIA4-011 203061366-203067765 retained_intron
  ENST00000597023 PPFIA4-010 203067445-203068600 retained_intron
  ENST00000599514 PPFIA4-007 203053746-203056806 protein_coding
  ENST00000599966 PPFIA4-008 203051240-203076953 protein_coding
  ENST00000600426 PPFIA4-004 203045466-203076497 protein_coding
  ENST00000600447 PPFIA4-006 203053703-203055557 retained_intron
  ENST00000601609 PPFIA4-013 203045409-203046507 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000295706ENST00000367240ENST00000447715ENST00000486360ENST00000599514ENST00000599966ENST00000600426ENST00000600447ENST00000601609
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000295706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.486±0.00 N/A 0.168±0.00
ENST00000367240 N/A N/A 0.303±0.00 3.160±0.00 0.049±0.00 N/A 0.156±0.00 N/A N/A N/A N/A 0.082±0.03 N/A
ENST00000447715 N/A N/A N/A N/A N/A 0.122±0.00 N/A N/A N/A N/A N/A 0.095±0.00 N/A
ENST00000486360 0.009±0.00 N/A N/A N/A 0.040±0.00 N/A 0.232±0.00 0.064±0.00 0.023±0.00 0.129±0.00 N/A 0.046±0.02 N/A
ENST00000599514 N/A N/A 3.020±0.00 N/A N/A N/A N/A N/A N/A 0.463±0.00 N/A N/A N/A
ENST00000599966 N/A N/A N/A N/A 0.189±0.00 0.106±0.00 N/A N/A N/A N/A N/A N/A 0.110±0.00
ENST00000600426 0.054±0.00 0.082±0.00 N/A N/A N/A N/A 0.390±0.00 N/A N/A N/A N/A 0.097±0.00 N/A
ENST00000600447 N/A N/A N/A N/A 1.476±0.00 0.747±0.00 2.768±0.00 N/A 0.751±0.00 2.081±0.00 N/A N/A N/A
ENST00000601609 N/A N/A N/A N/A 0.843±0.00 N/A N/A N/A N/A 0.625±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TW CIL_0000TW_0002 CGP 1:203007386-203078740
CIL_0000TV CIL_0000TV_0002 CGP 1:203026498-203086036

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005622 TAS intracellular
GO:0005737 IEA cytoplasm
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0045202 ISS synapse
GO:0048786 TAS presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053205 ppfia4 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 protein_coding Danio_rerio
ENSMUSG00000026458 Ppfia4 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 protein_coding Mus_musculus

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