C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168515 Ppfia4-001 ENSMUSG00000026458 10090 - 1:134296783-134332928 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaENSMUST00000168515
Transcript ID Brain Muscle Ovary Placenta
ENSMUST00000168515 28.426±0.00 0.079±0.00 0.146±0.02 0.336±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0008150 ND biological_process
GO:0045202 IDA synapse
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000010885 PPFIA1-201 protein_coding Danio_rerio 0 235
ENST00000272198 PPFIA4-002 protein_coding Homo_sapiens 0 2676
ENST00000295706 PPFIA4-201 protein_coding Homo_sapiens 0 2660
ENST00000334186 PPFIA3-001 protein_coding Homo_sapiens 0 222
ENST00000367240 PPFIA4-001 protein_coding Homo_sapiens 0 4981
ENST00000421230 PPFIA3-005 retained_intron Homo_sapiens 0 211
ENST00000447715 PPFIA4-005 protein_coding Homo_sapiens 0 2383
ENST00000486360 PPFIA4-003 retained_intron Homo_sapiens 0 896
ENST00000594656 PPFIA4-011 retained_intron Homo_sapiens 0 401
ENST00000597023 PPFIA4-010 retained_intron Homo_sapiens 0 350
ENST00000599514 PPFIA4-007 protein_coding Homo_sapiens 0 556
ENST00000599966 PPFIA4-008 protein_coding Homo_sapiens 0 2507
ENST00000600426 PPFIA4-004 protein_coding Homo_sapiens 0 2830
ENST00000600447 PPFIA4-006 retained_intron Homo_sapiens 0 344
ENST00000601609 PPFIA4-013 retained_intron Homo_sapiens 0 593
ENST00000602351 PPFIA3-006 protein_coding Homo_sapiens 0 222
ENST00000602492 PPFIA3-010 retained_intron Homo_sapiens 0 211
ENST00000602655 PPFIA3-002 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000602716 PPFIA3-004 retained_intron Homo_sapiens 0 211
ENST00000602726 PPFIA3-012 retained_intron Homo_sapiens 8e-33 145

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