C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000189361 Ppfia4-003 ENSMUSG00000026458 10090 - 1:134297501-134332928 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartMuscleOvaryPlacentaTestisENSMUST00000189361
Transcript ID Adipose Brain Colon Heart Muscle Ovary Placenta Testis
ENSMUST00000189361 1.019±0.05 3.792±0.00 0.202±0.07 0.241±0.00 0.110±0.07 0.422±0.20 0.430±0.00 0.912±0.18

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000010885 PPFIA1-201 protein_coding Danio_rerio 0 235
ENST00000272198 PPFIA4-002 protein_coding Homo_sapiens 0 2900
ENST00000295706 PPFIA4-201 protein_coding Homo_sapiens 0 2883
ENST00000334186 PPFIA3-001 protein_coding Homo_sapiens 0 222
ENST00000367240 PPFIA4-001 protein_coding Homo_sapiens 0 5204
ENST00000421230 PPFIA3-005 retained_intron Homo_sapiens 0 211
ENST00000447715 PPFIA4-005 protein_coding Homo_sapiens 0 2606
ENST00000486360 PPFIA4-003 retained_intron Homo_sapiens 0 896
ENST00000594656 PPFIA4-011 retained_intron Homo_sapiens 0 401
ENST00000597023 PPFIA4-010 retained_intron Homo_sapiens 0 350
ENST00000599514 PPFIA4-007 protein_coding Homo_sapiens 0 556
ENST00000599966 PPFIA4-008 protein_coding Homo_sapiens 0 2730
ENST00000600426 PPFIA4-004 protein_coding Homo_sapiens 0 2976
ENST00000600447 PPFIA4-006 retained_intron Homo_sapiens 0 344
ENST00000601609 PPFIA4-013 retained_intron Homo_sapiens 0 593
ENST00000602351 PPFIA3-006 protein_coding Homo_sapiens 0 222
ENST00000602492 PPFIA3-010 retained_intron Homo_sapiens 0 211
ENST00000602655 PPFIA3-002 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000602716 PPFIA3-004 retained_intron Homo_sapiens 0 211
ENST00000602726 PPFIA3-012 retained_intron Homo_sapiens 8e-33 145

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