C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000604586 RP11-416L21.2-001 ENSG00000271134 9606 - 2:60682873-60683244 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastLungOvaryPlacentaTestisENST00000604586
Transcript ID Adipose Adrenal Brain Breast Lung Ovary Placenta Testis
ENST00000604586 0.356±0.00 0.252±0.00 0.146±0.00 0.069±0.00 0.698±0.00 0.210±0.06 0.172±0.00 1.227±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008GM CIL_0008GM_0001 VISTA 2:60234269-60835938
CIL_0009DA CIL_0009DA_0001 VISTA 2:60267677-60869129
CIL_0008PG CIL_0008PG_0001 VISTA 2:60327921-60929753

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026564 Ifitm1-003 protein_coding Mus_musculus 2e-40 169
ENSMUST00000106040 Ifitm1-002 protein_coding Mus_musculus 2e-40 169
ENSMUST00000106042 Ifitm1-001 protein_coding Mus_musculus 2e-40 169
ENSMUST00000081649 Ifitm2-201 protein_coding Mus_musculus 2e-35 152
ENSMUST00000125697 Gm8865-001 processed_pseudogene Mus_musculus 4e-33 145

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