C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interferon induced transmembrane protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106042 Ifitm1-001 ENSMUSG00000025491 10090 + 7:140967221-140969825 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartLiverMuscleOvaryTestisENSMUST00000106042
Transcript ID Adipose Adrenal Breast Heart Liver Muscle Ovary Testis
ENSMUST00000106042 2.062±0.22 1.075±0.00 4.481±1.08 0.633±0.02 2.333±0.00 0.360±0.18 0.611±0.00 0.198±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UG CIL_0002UG_0004 CGP 7:140954839-140969825
CIL_0002UG CIL_0002UG_0003 CGP 7:140967221-141010770

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0001756 IMP somitogenesis
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005886 IEA plasma membrane
GO:0008285 ISS negative regulation of cell proliferation
GO:0009615 IDA response to virus
GO:0009952 IMP anterior/posterior pattern specification
GO:0016021 IEA integral component of membrane
GO:0030336 ISS negative regulation of cell migration
GO:0034341 ISS response to interferon-gamma
GO:0035455 ISS response to interferon-alpha
GO:0035456 ISS response to interferon-beta
GO:0045071 ISS negative regulation of viral genome replication
GO:0045669 ISS positive regulation of osteoblast differentiation
GO:0046597 IDA negative regulation of viral entry into host cell
GO:0051607 IDA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328221 IFITM1-003 protein_coding Homo_sapiens 0 215
ENST00000339867 RP3-391O22.3-001 processed_pseudogene Homo_sapiens 0 217
ENST00000399808 IFITM3-001 protein_coding Homo_sapiens 0 228
ENST00000399815 IFITM2-004 protein_coding Homo_sapiens 4e-28 128
ENST00000399817 IFITM2-001 protein_coding Homo_sapiens 0 211
ENST00000408968 IFITM1-001 protein_coding Homo_sapiens 0 215
ENST00000426041 RP11-460I13.6-001 processed_pseudogene Homo_sapiens 4e-33 145
ENST00000453713 RP11-467L13.5-001 processed_pseudogene Homo_sapiens 0 206
ENST00000526811 IFITM3-002 protein_coding Homo_sapiens 0 228
ENST00000527146 IFITM2-002 nonsense_mediated_decay Homo_sapiens 1e-24 117
ENST00000528780 IFITM1-002 protein_coding Homo_sapiens 0 211
ENST00000533141 IFITM2-003 protein_coding Homo_sapiens 0 211
ENST00000566165 CRISPLD2-013 nonsense_mediated_decay Homo_sapiens 2e-37 159
ENST00000602569 IFITM2-005 protein_coding Homo_sapiens 0 211
ENST00000602735 IFITM3-004 protein_coding Homo_sapiens 0 228
ENST00000604586 RP11-416L21.2-001 processed_pseudogene Homo_sapiens 2e-40 169
ENST00000616316 IFITM2-201 protein_coding Homo_sapiens 0 211
ENST00000619184 IFITM2-202 protein_coding Homo_sapiens 0 195

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