C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interferon induced transmembrane protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081649 Ifitm2-201 ENSMUSG00000060591 10090 - 7:140954839-140955961 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081649
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081649 411.799±203.01 565.753±26.58 398.182±43.26 39.163±28.11 466.618±119.20 321.507±65.00 127.150±19.91 284.543±26.10 400.821±138.66 490.107±202.49 32.291±3.32 687.075±302.69 41.006±30.78 17.159±9.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UF CIL_0002UF_0002 CGP 7:140948963-140955961
CIL_0002UG CIL_0002UG_0004 CGP 7:140954839-140969825

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005886 IEA plasma membrane
GO:0009615 IDA response to virus
GO:0016021 IEA integral component of membrane
GO:0045087 IEA innate immune response
GO:0046597 IDA negative regulation of viral entry into host cell
GO:0051607 IDA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399817 IFITM2-001 protein_coding Homo_sapiens 0 213
ENST00000426041 RP11-460I13.6-001 processed_pseudogene Homo_sapiens 6e-21 104
ENST00000527146 IFITM2-002 nonsense_mediated_decay Homo_sapiens 2e-22 110
ENST00000533141 IFITM2-003 protein_coding Homo_sapiens 0 213
ENST00000602569 IFITM2-005 protein_coding Homo_sapiens 0 213
ENST00000604586 RP11-416L21.2-001 processed_pseudogene Homo_sapiens 2e-35 152
ENST00000616316 IFITM2-201 protein_coding Homo_sapiens 0 213

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