C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000611339 AC136616.1-202 ENSG00000273554 9606 - KI270728.1:1139577-1146654 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverPlacentaTestisENST00000611339
Transcript ID Brain Breast Heart Kidney Liver Placenta Testis
ENST00000611339 0.015±0.00 0.007±0.00 0.037±0.00 0.022±0.00 0.121±0.00 0.052±0.04 0.161±0.05

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0006836 IEA neurotransmitter transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114465 Slc6a8-002 protein_coding Mus_musculus 0 2479
ENSMUST00000114467 Slc6a8-201 protein_coding Mus_musculus 0 2453
ENSMUST00000033752 Slc6a8-001 protein_coding Mus_musculus 0 2416
ENSMUST00000168831 Slc6a8-003 protein_coding Mus_musculus 0 2338
ENSMUST00000164449 Slc6a8-006 protein_coding Mus_musculus 0 2211
ENSMUST00000114464 Slc6a8-004 nonsense_mediated_decay Mus_musculus 0 1945
ENSMUST00000170614 Slc6a8-009 retained_intron Mus_musculus 0 1500
ENSMUST00000168764 Slc6a8-013 retained_intron Mus_musculus 0 760
ENSMUST00000171398 Slc6a8-012 protein_coding Mus_musculus 0 617
ENSMUST00000146796 Slc6a8-011 retained_intron Mus_musculus 0 590
ENSMUST00000166200 Slc6a8-010 processed_transcript Mus_musculus 0 531
ENSMUST00000167828 Slc6a8-014 retained_intron Mus_musculus 0 438
ENSMUST00000170574 Slc6a8-015 retained_intron Mus_musculus 0 327
ENSDART00000092131 si:ch211-117c9.5-001 protein_coding Danio_rerio 3e-27 128
ENSDART00000149136 si:ch211-117c9.5-002 protein_coding Danio_rerio 3e-23 115

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